{
  "checks": [
    "payload SHA256",
    "single/pair/all manifest validation",
    "automatic input discovery",
    "paired FASTQ IDs/lengths",
    "complete contig-to-genome assignment",
    "Prodigal meta gene predictions on every contig"
  ],
  "workflow_executed": false,
  "samples": [
    {
      "sample_id": "Gastrointestinal_5",
      "assembly_bases": 150000,
      "pairs": 2326,
      "predicted_genes_per_contig": {
        "S5C2519": 59,
        "S5C5928": 42,
        "S5C5950": 41
      }
    },
    {
      "sample_id": "Skin_28",
      "assembly_bases": 150000,
      "pairs": 3000,
      "predicted_genes_per_contig": {
        "S28C1233": 42,
        "S28C1662": 40,
        "S28C1722": 40
      }
    },
    {
      "sample_id": "Urogenital_22",
      "assembly_bases": 150000,
      "pairs": 3000,
      "predicted_genes_per_contig": {
        "S22C5358": 50,
        "S22C8829": 45,
        "S22C9504": 47
      }
    }
  ],
  "small_reference_check": {
    "method": "Prodigal meta-mode proteins searched with BLASTP against bundled swissprot_test at E <= 1e-6; not full MP annotation/BSR filtering",
    "ORFs_with_hits": {
      "Gastrointestinal_5": 3,
      "Skin_28": 3,
      "Urogenital_22": 4
    }
  }
}